Aldy
latest
Contents:
Algorithm details
⚠️ Warning
Installation
Sanity check
Running
Output
Sample datasets
License
Parameters & Usage
Gene Support
Change log
Acknowledgments
Contact & Bug Reports
API Tutorial
Database Specification
API documentation
Aldy
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Welcome to Aldy’s documentation!
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Welcome to Aldy’s documentation!
¶
Contents:
Algorithm details
⚠️ Warning
Installation
Prerequisite: ILP solver
Sanity check
Running
Sequencing profile selection
Output
VCF support
Problems & Debugging
Sample datasets
License
Parameters & Usage
NAME
:
SYNOPSIS
:
OPTIONS
:
Global arguments:
Commands:
Gene Support
Change log
Acknowledgments
Contact & Bug Reports
API Tutorial
One-step genotyping API
Loading a gene
Loading a SAM/BAM or VCF file
Detecting copy number configurations and fusions
Calling the major and minor star-alleles
Database Specification
Caveats
YAML specification
API documentation
Major modules
aldy.gene module
aldy.profile module
aldy.sam module
aldy.coverage module
Genotyping modules
aldy.genotype module
aldy.cn module
aldy.major module
aldy.minor module
aldy.diplotype module
Auxiliary modules
aldy.common module
aldy.lpinterface module
Indices and tables
¶
Index
Module Index
Search Page
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